TSS: Rfhg 134712.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000503729.2)
|annotation=promoter-TSS (NM_002645)
|ccre_category=dELS
|ccre_category=dELS
|ccre_description=dELS,CTCF-bound (EH38D2428138,EH38E1524546)
|ccre_description=dELS,CTCF-bound (EH38D2428138,EH38E1524546)
|chr=chr11
|chr=chr11
|cpg_percent=0.109589
|cpg_percent=0.109589
|detailed_annotation=protein_coding-promoter-TSS (ENST00000503729.2)
|detailed_annotation=promoter-TSS (NM_002645)
|distance=0
|distance=0
|distance_to_tss=-14
|distance_to_tss=22
|end=17208001
|end=17208001
|entrez_id=ENSG00000011405
|entrez_id=5286
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.675676
|gc_percent=0.675676
|gene_alias=
|gene_alias=CPK{{!}}OCSKD{{!}}PI3-K-C2(ALPHA){{!}}PI3-K-C2A{{!}}PI3K-C2-alpha{{!}}PI3K-C2alpha
|gene_description=
|gene_description=phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
|gene_id=5286
|gene_id=5286
|gene_name=phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
|gene_name=PIK3C2A
|gene_source=HGNC:8971
|gene_source=HGNC:8971
|gene_symbol=PIK3C2A
|gene_symbol=PIK3C2A
|gene_synonyms=PI3K-C2alpha
|gene_synonyms=PI3K-C2alpha
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:8971
|hgnc_mgi_id=HGNC:8971
|nearest_ensembl=
|nearest_ensembl=ENSG00000011405
|nearest_promoter_id=ENST00000532035.1
|nearest_promoter_id=NM_001321380
|nearest_refseq=
|nearest_refseq=NM_002645
|nearest_unigene=ENST00000533645
|nearest_unigene=Hs.175343
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=17207927
|start=17207928
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 02:01, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_134712.1
TSS ID(Version3):hg_118857.1
Species:human
Chr:chr11
Start:17207928
End:17208001
Strand:-
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS,CTCF-bound (EH38D2428138,EH38E1524546)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000533645.1:0
ENST00000532035.1:0
ENST00000503729.2:0
AK304262:0
AK294416:0
AK299474:0
AK310248:0
BC040952:0
BC031681:0
BC035982:0
GeneID:5286
HGNC/MGI_ID:HGNC:8971
UniProt_ID:A0A0C4DGF9 B4DG55 B4DRX6 E9PPP3
Nearer transcript ids and distances:
    Gene_name:PIK3C2A
    Gene_symbol:PIK3C2A
    Gene_synonyms:PI3K-C2alpha
    Gene_source:HGNC:8971



    TATA-Box annotation

    Distance to TSS:22
    Nearest PromoterID:NM_001321380
    Entrez ID:5286
    Nearest Unigene:Hs.175343
    Nearest Refseq:NM_002645
    Nearest Ensembl:ENSG00000011405
    Gene Name:PIK3C2A
    Gene Alias:CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha
    Gene Type:protein-coding
    CpG%:0.109589
    GC%:0.675676
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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