TSS: Rfhg 134769.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2428625,EH38E1524863) | |ccre_description=PLS,CTCF-bound (EH38D2428625,EH38E1524863) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.206897 | |cpg_percent=0.206897 | ||
|detailed_annotation= | |detailed_annotation=CpG | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-1172 | ||
|end=17734820 | |end=17734820 | ||
|entrez_id= | |entrez_id=3746 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.784091 | |gc_percent=0.784091 | ||
|gene_alias= | |gene_alias=EPM7{{!}}KV3.1{{!}}KV4{{!}}NGK2 | ||
|gene_description= | |gene_description=potassium voltage-gated channel subfamily C member 1 | ||
|gene_id=3746 | |gene_id=3746 | ||
|gene_name= | |gene_name=KCNC1 | ||
|gene_source=HGNC:6233 | |gene_source=HGNC:6233 | ||
|gene_symbol=KCNC1 | |gene_symbol=KCNC1 | ||
|gene_synonyms=Kv3.1 | |gene_synonyms=Kv3.1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:6233 | |hgnc_mgi_id=HGNC:6233 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000129159 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_004976 | ||
|nearest_refseq= | |nearest_refseq=NM_004976 | ||
|nearest_unigene= | |nearest_unigene=Hs.552896 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=17734733 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 02:02, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2428625,EH38E1524863) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1172 |
|---|---|
| Nearest PromoterID: | NM_004976 |
| Entrez ID: | 3746 |
| Nearest Unigene: | Hs.552896 |
| Nearest Refseq: | NM_004976 |
| Nearest Ensembl: | ENSG00000129159 |
| Gene Name: | KCNC1 |
| Gene Alias: | EPM7|KV3.1|KV4|NGK2 |
| Gene Type: | protein-coding |
| CpG%: | 0.206897 |
| GC%: | 0.784091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.