TSS: Rfhg 136752.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000263774.8)
|annotation=promoter-TSS (NM_004551)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2450440,EH38E1538351)
|ccre_description=PLS,CTCF-bound (EH38D2450440,EH38E1538351)
|chr=chr11
|chr=chr11
|cpg_percent=0.075000
|cpg_percent=0.075000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000263774.8)
|detailed_annotation=promoter-TSS (NM_004551)
|distance=0
|distance=0
|distance_to_tss=10
|distance_to_tss=-24
|end=47579090
|end=47579090
|entrez_id=ENSG00000213619
|entrez_id=4722
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.592593
|gc_percent=0.592593
|gene_alias=
|gene_alias=CI-30{{!}}MC1DN8
|gene_description=
|gene_description=NADH:ubiquinone oxidoreductase core subunit S3
|gene_id=4722
|gene_id=4722
|gene_name=NADH:ubiquinone oxidoreductase core subunit S3
|gene_name=NDUFS3
|gene_source=HGNC:7710
|gene_source=HGNC:7710
|gene_symbol=NDUFS3
|gene_symbol=NDUFS3
|gene_synonyms=CI-30
|gene_synonyms=CI-30
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:7710
|hgnc_mgi_id=HGNC:7710
|nearest_ensembl=
|nearest_ensembl=ENSG00000213619
|nearest_promoter_id=ENST00000528192.5
|nearest_promoter_id=NM_004551
|nearest_refseq=
|nearest_refseq=NM_004551
|nearest_unigene=ENST00000531351
|nearest_unigene=Hs.502528
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=47579009
|start=47579010
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 02:38, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_136752.1
TSS ID(Version3):hg_114228.1
hg_233013.1
Species:human
Chr:chr11
Start:47579010
End:47579090
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2450440,EH38E1538351)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000529276.1:0
ENST00000528192.5:0
ENST00000530295.5:0
ENST00000534208.5:0
ENST00000534716.2:0
ENST00000263774.9:0
ENST00000533105.1:0
BC000617:0
AK313802:0
AK223255:0
AF067139:0
AF100743:0
AK294167:0
GeneID:4722
HGNC/MGI_ID:HGNC:7710
UniProt_ID:E9PJE7 E9PKL8 E9PS48 G3V194 O75489 Q53FM7
Nearer transcript ids and distances:
    Gene_name:NDUFS3
    Gene_symbol:NDUFS3
    Gene_synonyms:CI-30
    Gene_source:HGNC:7710



    TATA-Box annotation

    Distance to TSS:-24
    Nearest PromoterID:NM_004551
    Entrez ID:4722
    Nearest Unigene:Hs.502528
    Nearest Refseq:NM_004551
    Nearest Ensembl:ENSG00000213619
    Gene Name:NDUFS3
    Gene Alias:CI-30|MC1DN8
    Gene Type:protein-coding
    CpG%:0.075000
    GC%:0.592593
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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