TSS: Rfhg 140244.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000534673.5, intron 1 of 7) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D2462722,EH38E1547587) |chr=chr11 |cpg_percent=0...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_001351059, intron 1 of 18) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2462722,EH38E1547587) | |ccre_description=pELS,CTCF-bound (EH38D2462722,EH38E1547587) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=MIR{{!}}SINE{{!}}MIR | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=399 | ||
|end=68039441 | |end=68039441 | ||
|entrez_id= | |entrez_id=10312 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.485714 | |gc_percent=0.485714 | ||
|gene_alias= | |gene_alias=ATP6N1C{{!}}ATP6V0A3{{!}}Atp6i{{!}}OC-116kDa{{!}}OC116{{!}}OPTB1{{!}}Stv1{{!}}TIRC7{{!}}Vph1{{!}}a3 | ||
|gene_description= | |gene_description=T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TCIRG1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000110719 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_006019 | ||
|nearest_refseq= | |nearest_refseq=NM_006019 | ||
|nearest_unigene= | |nearest_unigene=Hs.495985 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=68039407 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 03:41, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2462722,EH38E1547587) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 399 |
|---|---|
| Nearest PromoterID: | NM_006019 |
| Entrez ID: | 10312 |
| Nearest Unigene: | Hs.495985 |
| Nearest Refseq: | NM_006019 |
| Nearest Ensembl: | ENSG00000110719 |
| Gene Name: | TCIRG1 |
| Gene Alias: | ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.485714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |