TSS: Rfhg 141787.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000358867.10)
|annotation=promoter-TSS (NM_001193538)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2478247,EH38E1558096)
|ccre_description=PLS,CTCF-bound (EH38D2478247,EH38E1558096)
|chr=chr11
|chr=chr11
|cpg_percent=0.037037
|cpg_percent=0.037037
|detailed_annotation=protein_coding-promoter-TSS (ENST00000358867.10)
|detailed_annotation=promoter-TSS (NM_001193538)
|distance=0
|distance=0
|distance_to_tss=0
|distance_to_tss=32
|end=85628632
|end=85628632
|entrez_id=ENSG00000171204
|entrez_id=55863
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.581818
|gc_percent=0.581818
|gene_alias=
|gene_alias=HT007{{!}}MC1DN29
|gene_description=
|gene_description=transmembrane protein 126B
|gene_id=55863
|gene_id=55863
|gene_name=transmembrane protein 126B
|gene_name=TMEM126B
|gene_source=HGNC:30883
|gene_source=HGNC:30883
|gene_symbol=TMEM126B
|gene_symbol=TMEM126B
|gene_synonyms=HT007
|gene_synonyms=HT007
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:30883
|hgnc_mgi_id=HGNC:30883
|nearest_ensembl=
|nearest_ensembl=ENSG00000171204
|nearest_promoter_id=ENST00000529197.1
|nearest_promoter_id=NM_001256546
|nearest_refseq=
|nearest_refseq=NM_018480
|nearest_unigene=ENST00000531274
|nearest_unigene=Hs.525063
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=85628577
|start=85628578
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 04:09, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_141787.1
TSS ID(Version3):hg_116086.1
Species:human
Chr:chr11
Start:85628578
End:85628632
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2478247,EH38E1558096)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000531718.5:0
ENST00000531477.5:0
ENST00000358867.11:0
ENST00000528361.5:0
ENST00000530783.5:0
ENST00000534341.1:0
ENST00000526822.5:0
ENST00000529197.1:0
ENST00000530901.1:0
ENST00000531274.1:0
AK298189:0
BC017574:0
BC107900:0
AF246240:0
AK291150:0
AF220193:0
BC038933:0
BC012065:0
GeneID:55863
HGNC/MGI_ID:HGNC:30883
UniProt_ID:B4DP48 E9PJQ6 E9PKZ7 E9PKZ9 H0YD74 H0YEG5 Q8IUX1 Q9H2Q3
Nearer transcript ids and distances:
    Gene_name:TMEM126B
    Gene_symbol:TMEM126B
    Gene_synonyms:HT007
    Gene_source:HGNC:30883



    TATA-Box annotation

    Distance to TSS:32
    Nearest PromoterID:NM_001256546
    Entrez ID:55863
    Nearest Unigene:Hs.525063
    Nearest Refseq:NM_018480
    Nearest Ensembl:ENSG00000171204
    Gene Name:TMEM126B
    Gene Alias:HT007|MC1DN29
    Gene Type:protein-coding
    CpG%:0.037037
    GC%:0.581818
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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