TSS: Rfhg 143100.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000260257.8)
|annotation=promoter-TSS (NM_001330371)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2497212,EH38E1569663)
|ccre_description=PLS,CTCF-bound (EH38D2497212,EH38E1569663)
|chr=chr11
|chr=chr11
|cpg_percent=0.166667
|cpg_percent=0.166667
|detailed_annotation=protein_coding-promoter-TSS (ENST00000260257.8)
|detailed_annotation=promoter-TSS (NM_001330371)
|distance=-267
|distance=-267
|distance_to_tss=-16
|distance_to_tss=-16
|end=111879214
|end=111879214
|entrez_id=ENSG00000137720
|entrez_id=64776
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.769231
|gc_percent=0.769231
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=chromosome 11 open reading frame 1
|gene_id=64776
|gene_id=64776
|gene_name=cilia and flagella associated protein 68
|gene_name=C11orf1
|gene_source=HGNC:1163
|gene_source=HGNC:1163
|gene_symbol=CFAP68
|gene_symbol=CFAP68
|gene_synonyms=FLJ23499
|gene_synonyms=FLJ23499
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:1163
|hgnc_mgi_id=HGNC:1163
|nearest_ensembl=
|nearest_ensembl=ENSG00000137720
|nearest_promoter_id=ENST00000260276.7
|nearest_promoter_id=NM_001330371
|nearest_refseq=
|nearest_refseq=NM_022761
|nearest_unigene=ENST00000260276
|nearest_unigene=Hs.17546
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=111879201
|start=111879202
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 04:33, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_143100.1
Species:human
Chr:chr11
Start:111879202
End:111879214
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2497212,EH38E1569663)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000528125.5:-267
GeneID:64776
HGNC/MGI_ID:HGNC:1163
UniProt_ID:E9PLN1
Nearer transcript ids and distances:
    Gene_name:C11orf1
    Gene_symbol:CFAP68
    Gene_synonyms:FLJ23499
    Gene_source:HGNC:1163



    TATA-Box annotation

    Distance to TSS:-16
    Nearest PromoterID:NM_001330371
    Entrez ID:64776
    Nearest Unigene:Hs.17546
    Nearest Refseq:NM_022761
    Nearest Ensembl:ENSG00000137720
    Gene Name:C11orf1
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.166667
    GC%:0.769231
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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