TSS: Rfhg 143868.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001197104) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.069767 | |cpg_percent=0.069767 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001197104) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-4 | |distance_to_tss=-4 | ||
|end=118436508 | |end=118436508 | ||
|entrez_id= | |entrez_id=4297 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.636364 | |gc_percent=0.636364 | ||
|gene_alias= | |gene_alias=ALL-1{{!}}CXXC7{{!}}HRX{{!}}HTRX1{{!}}MLL{{!}}MLL1{{!}}MLL1A{{!}}TRX1{{!}}WDSTS | ||
|gene_description= | |gene_description=lysine methyltransferase 2A | ||
|gene_id=4297 | |gene_id=4297 | ||
|gene_name= | |gene_name=KMT2A | ||
|gene_source=HGNC:7132 | |gene_source=HGNC:7132 | ||
|gene_symbol=KMT2A | |gene_symbol=KMT2A | ||
|gene_synonyms=ALL-1 ALL1 CXXC7 HRX HTRX HTRX1 MLL1 MLL1A TRX1 | |gene_synonyms=ALL-1 ALL1 CXXC7 HRX HTRX HTRX1 MLL1 MLL1A TRX1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7132 | |hgnc_mgi_id=HGNC:7132 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000118058 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001197104 | ||
|nearest_refseq= | |nearest_refseq=NM_005933 | ||
|nearest_unigene= | |nearest_unigene=Hs.258855 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=118436465 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 04:47, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 5 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_001197104 |
| Entrez ID: | 4297 |
| Nearest Unigene: | Hs.258855 |
| Nearest Refseq: | NM_005933 |
| Nearest Ensembl: | ENSG00000118058 |
| Gene Name: | KMT2A |
| Gene Alias: | ALL-1|CXXC7|HRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS |
| Gene Type: | protein-coding |
| CpG%: | 0.069767 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.