TSS: Rfhg 144517.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000453788.6) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D2508251,EH38E1577765) |chr=chr11 |cpg_percent=0.093023 |...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_153201) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2508251,EH38E1577765) | |ccre_description=pELS,CTCF-bound (EH38D2508251,EH38E1577765) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.093023 | |cpg_percent=0.093023 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_153201) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-513 | ||
|end=123062671 | |end=123062671 | ||
|entrez_id= | |entrez_id=3312 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.704545 | |gc_percent=0.704545 | ||
|gene_alias= | |gene_alias=HEL-33{{!}}HEL-S-72p{{!}}HSC54{{!}}HSC70{{!}}HSC71{{!}}HSP71{{!}}HSP73{{!}}HSPA10{{!}}LAP-1{{!}}LAP1{{!}}NIP71 | ||
|gene_description= | |gene_description=heat shock protein family A (Hsp70) member 8 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=HSPA8 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000109971 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_153201 | ||
|nearest_refseq= | |nearest_refseq=NM_006597 | ||
|nearest_unigene= | |nearest_unigene=Hs.180414 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=123062628 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 04:59, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 7 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2508251,EH38E1577765) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -513 |
|---|---|
| Nearest PromoterID: | NM_153201 |
| Entrez ID: | 3312 |
| Nearest Unigene: | Hs.180414 |
| Nearest Refseq: | NM_006597 |
| Nearest Ensembl: | ENSG00000109971 |
| Gene Name: | HSPA8 |
| Gene Alias: | HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 |
| Gene Type: | protein-coding |
| CpG%: | 0.093023 |
| GC%: | 0.704545 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |