TSS: Rfhg 148254.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000637435.1, exon 7 of 7) |ccre_category=DNase-H3K4me3 |ccre_description=DNase-H3K4me3 (EH38D2534508,EH38E1596162) |chr=chr12 |cpg_percen...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
|ccre_description=DNase-H3K4me3 (EH38D2534508,EH38E1596162) | |ccre_description=DNase-H3K4me3 (EH38D2534508,EH38E1596162) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.034483 | |cpg_percent=0.034483 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-179789 | ||
|end=16788018 | |end=16788018 | ||
|entrez_id= | |entrez_id=55885 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=RBTN3{{!}}RBTNL2{{!}}RHOM3{{!}}Rhom-3 | ||
|gene_description= | |gene_description=LIM domain only 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LMO3 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000048540 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001243609 | ||
|nearest_refseq= | |nearest_refseq=NM_018640 | ||
|nearest_unigene= | |nearest_unigene=Hs.504908 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=16787989 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 06:05, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3 (EH38D2534508,EH38E1596162) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -179789 |
|---|---|
| Nearest PromoterID: | NM_001243609 |
| Entrez ID: | 55885 |
| Nearest Unigene: | Hs.504908 |
| Nearest Refseq: | NM_018640 |
| Nearest Ensembl: | ENSG00000048540 |
| Gene Name: | LMO3 |
| Gene Alias: | RBTN3|RBTNL2|RHOM3|Rhom-3 |
| Gene Type: | protein-coding |
| CpG%: | 0.034483 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |