TSS: Rfhg 1520.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000496432.6, intron 2 of 8) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D2126130,EH38E1318251) |chr=chr1 |cpg_percent=0....")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENST00000496432.6, intron 2 of 8)
|annotation=intron (NM_001079843, intron 4 of 20)
|ccre_category=dELS
|ccre_category=dELS
|ccre_description=dELS,CTCF-bound (EH38D2126130,EH38E1318251)
|ccre_description=dELS,CTCF-bound (EH38D2126130,EH38E1318251)
|chr=chr1
|chr=chr1
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENST00000344008.5, intron 4 of 15)
|detailed_annotation=intron (NM_001079843, intron 4 of 20)
|distance=
|distance=
|distance_to_tss=202
|distance_to_tss=102936
|end=10693716
|end=10693716
|entrez_id=ENSG00000130940
|entrez_id=54897
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
|gene_alias=
|gene_alias=CAS11{{!}}CST{{!}}SRG{{!}}ZNF693{{!}}dJ734G22.1
|gene_description=
|gene_description=castor zinc finger 1
|gene_id=
|gene_id=
|gene_name=
|gene_name=CASZ1
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=ENSG00000130940
|nearest_promoter_id=ENST00000478728.2
|nearest_promoter_id=NM_001079843
|nearest_refseq=
|nearest_refseq=NM_017766
|nearest_unigene=ENST00000496432
|nearest_unigene=Hs.439894
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=10693704
|start=10693705
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 07:12, 23 June 2023

Basic information about the TSS


TSS ID:rfhg_1520.1
Species:human
Chr:chr1
Start:10693705
End:10693716
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D2126130,EH38E1318251)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:CASZ1
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:102936
    Nearest PromoterID:NM_001079843
    Entrez ID:54897
    Nearest Unigene:Hs.439894
    Nearest Refseq:NM_017766
    Nearest Ensembl:ENSG00000130940
    Gene Name:CASZ1
    Gene Alias:CAS11|CST|SRG|ZNF693|dJ734G22.1
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):