TSS: Rfhg 154332.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000266712.10)
|annotation=promoter-TSS (NM_001366580)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2586942,EH38E1630094)
|ccre_description=PLS,CTCF-bound (EH38D2586942,EH38E1630094)
|chr=chr12
|chr=chr12
|cpg_percent=0.065693
|cpg_percent=0.065693
|detailed_annotation=protein_coding-promoter-TSS (ENST00000266712.10)
|detailed_annotation=promoter-TSS (NM_001366580)
|distance=0
|distance=0
|distance_to_tss=-57
|distance_to_tss=82
|end=88142203
|end=88142203
|entrez_id=ENSG00000198707
|entrez_id=80184
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.565217
|gc_percent=0.565217
|gene_alias=
|gene_alias=3H11Ag{{!}}BBS14{{!}}CT87{{!}}JBTS5{{!}}LCA10{{!}}MKS4{{!}}NPHP6{{!}}POC3{{!}}SLSN6{{!}}rd16
|gene_description=
|gene_description=centrosomal protein 290
|gene_id=80184
|gene_id=80184
|gene_name=centrosomal protein 290
|gene_name=CEP290
|gene_source=HGNC:29021
|gene_source=HGNC:29021
|gene_symbol=CEP290
|gene_symbol=CEP290
|gene_synonyms=3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16
|gene_synonyms=3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:29021
|hgnc_mgi_id=HGNC:29021
|nearest_ensembl=
|nearest_ensembl=ENSG00000198707
|nearest_promoter_id=ENST00000550962.5
|nearest_promoter_id=NM_025114
|nearest_refseq=
|nearest_refseq=NM_025114
|nearest_unigene=ENST00000552770
|nearest_unigene=Hs.150444
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=88142065
|start=88142066
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 07:54, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_154332.1
TSS ID(Version3):hg_132405.1
Species:human
Chr:chr12
Start:88142066
End:88142203
Strand:-
Source datasets
Protocol
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2586942,EH38E1630094)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000552810.6:0
ENST00000674971.1:0
ENST00000672414.2:0
ENST00000673058.2:0
ENST00000675833.1:0
ENST00000675476.1:0
ENST00000309041.12:0
ENST00000675794.1:0
ENST00000676074.1:0
ENST00000675408.1:0
ENST00000675230.1:0
ENST00000675628.1:0
ENST00000676448.1:0
ENST00000547926.7:0
ENST00000671822.2:0
ENST00000676351.1:0
ENST00000397838.8:0
ENST00000675559.1:0
ENST00000676418.1:0
ENST00000676331.1:0
ENST00000552770.3:0
GeneID:80184
HGNC/MGI_ID:HGNC:29021
UniProt_ID:A0A0A0MS86 A0A5F9ZHU6 A0A5F9ZHV7 A0A6Q8PFZ5 A0A6Q8PG44 A0A6Q8PGA1 A0A6Q8PGB1 A0A6Q8PGC3 A0A6Q8PGP6 A0A6Q8PGQ4 A0A6Q8PH24 A0A6Q8PH78 F8VS29 F8W097 J3KNF5 O15078
Nearer transcript ids and distances:
    Gene_name:CEP290
    Gene_symbol:CEP290
    Gene_synonyms:3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16
    Gene_source:HGNC:29021



    TATA-Box annotation

    Distance to TSS:82
    Nearest PromoterID:NM_025114
    Entrez ID:80184
    Nearest Unigene:Hs.150444
    Nearest Refseq:NM_025114
    Nearest Ensembl:ENSG00000198707
    Gene Name:CEP290
    Gene Alias:3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16
    Gene Type:protein-coding
    CpG%:0.065693
    GC%:0.565217
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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