TSS: Rfhg 155141.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=CTCF-only |ccre_description=CTCF-only,CTCF-bound (EH38D2595255,EH38E1636034) |chr=chr12 |cpg_percent=0.000000 |detailed_ann...") |
No edit summary |
||
| Line 5: | Line 5: | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=L2a{{!}}LINE{{!}}L2 | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-204442 | ||
|end=97258337 | |end=97258337 | ||
|entrez_id= | |entrez_id=196475 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.428571 | |gc_percent=0.428571 | ||
|gene_alias= | |gene_alias=LINC00054{{!}}NCRMS{{!}}NCRNA00054 | ||
|gene_description= | |gene_description=rhabdomyosarcoma 2 associated transcript | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=RMST | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000255794 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_152618 | ||
|nearest_refseq= | |nearest_refseq=NR_024037 | ||
|nearest_unigene= | |nearest_unigene=Hs.652568 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=97258331 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 08:07, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | CTCF-only,CTCF-bound (EH38D2595255,EH38E1636034) |
|---|---|
| Category: | CTCF-only |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -204442 |
|---|---|
| Nearest PromoterID: | NR_152618 |
| Entrez ID: | 196475 |
| Nearest Unigene: | Hs.652568 |
| Nearest Refseq: | NR_024037 |
| Nearest Ensembl: | ENSG00000255794 |
| Gene Name: | RMST |
| Gene Alias: | LINC00054|NCRMS|NCRNA00054 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.428571 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |