TSS: Rfhg 157544.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000423999.2)
|annotation=intron (NR_135044, intron 1 of 3)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2617049,EH38E1651318)
|ccre_description=PLS,CTCF-bound (EH38D2617049,EH38E1651318)
|chr=chr12
|chr=chr12
|cpg_percent=0.009615
|cpg_percent=0.009615
|detailed_annotation=processed_transcript-promoter-TSS (ENST00000423999.2)
|detailed_annotation=MLT1K{{!}}LTR{{!}}ERVL-MaLR
|distance=0
|distance=0
|distance_to_tss=-28
|distance_to_tss=1039
|end=122064381
|end=122064381
|entrez_id=ENSG00000256546
|entrez_id=100506691
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.542857
|gc_percent=0.542857
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=uncharacterized LOC100506691
|gene_id=100506691
|gene_id=100506691
|gene_name=long intergenic non-protein coding RNA 2985
|gene_name=LOC100506691
|gene_source=HGNC:56073
|gene_source=HGNC:56073
|gene_symbol=LINC02985
|gene_symbol=LINC02985
|gene_synonyms=AC156455.1
|gene_synonyms=AC156455.1
|gene_type=processed_transcript
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:56073
|hgnc_mgi_id=HGNC:56073
|nearest_ensembl=
|nearest_ensembl=ENSG00000256546
|nearest_promoter_id=ENST00000423999.2
|nearest_promoter_id=NR_135044
|nearest_refseq=
|nearest_refseq=NR_135044
|nearest_unigene=ENST00000540968
|nearest_unigene=Hs.536336
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=122064276
|start=122064277
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 08:49, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_157544.1
TSS ID(Version3):hg_128507.1
hg_128509.1
hg_128508.1
Species:human
Chr:chr12
Start:122064277
End:122064381
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2617049,EH38E1651318)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:KX645782:0
KX645783:0
KX645781:0
GeneID:100506691
HGNC/MGI_ID:HGNC:56073
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LOC100506691
    Gene_symbol:LINC02985
    Gene_synonyms:AC156455.1
    Gene_source:HGNC:56073



    TATA-Box annotation

    Distance to TSS:1039
    Nearest PromoterID:NR_135044
    Entrez ID:100506691
    Nearest Unigene:Hs.536336
    Nearest Refseq:NR_135044
    Nearest Ensembl:ENSG00000256546
    Gene Name:LOC100506691
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.009615
    GC%:0.542857
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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