TSS: Rfhg 161590.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000218652.11, exon 3 of 8) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D2671420,EH38E1685684) |chr=chr13 |cpg_percent=0.00...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |annotation=exon (NM_001161407, exon 3 of 8) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D2671420,EH38E1685684) | |ccre_description=dELS,CTCF-bound (EH38D2671420,EH38E1685684) | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_001161407, exon 3 of 8) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-33369 | ||
|end=79533358 | |end=79533358 | ||
|entrez_id= | |entrez_id=103724388 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 1068 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LINC01068 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000227676 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_125772 | ||
|nearest_refseq= | |nearest_refseq=NR_125772 | ||
|nearest_unigene= | |nearest_unigene=Hs.434862 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=79533358 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 09:59, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2671420,EH38E1685684) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -33369 |
|---|---|
| Nearest PromoterID: | NR_125772 |
| Entrez ID: | 103724388 |
| Nearest Unigene: | Hs.434862 |
| Nearest Refseq: | NR_125772 |
| Nearest Ensembl: | ENSG00000227676 |
| Gene Name: | LINC01068 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |