TSS: Rfhg 163735.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000390453.1) |ccre_category=PLS |ccre_description=PLS (EH38D2698883,EH38E1701944) |chr=chr14 |cpg_percent=0.055556 |detailed_anno...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2698883,EH38E1701944) | |ccre_description=PLS (EH38D2698883,EH38E1701944) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.055556 | |cpg_percent=0.055556 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=327438 | ||
|end=22105324 | |end=22105324 | ||
|entrez_id= | |entrez_id=105370401 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.368421 | |gc_percent=0.368421 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC105370401 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LOC105370401 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_148363 | ||
|nearest_refseq= | |nearest_refseq=NR_148361 | ||
|nearest_unigene= | |nearest_unigene=Hs.435144 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=22105306 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 10:35, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2698883,EH38E1701944) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 327438 |
|---|---|
| Nearest PromoterID: | NR_148363 |
| Entrez ID: | 105370401 |
| Nearest Unigene: | Hs.435144 |
| Nearest Refseq: | NR_148361 |
| Nearest Ensembl: | |
| Gene Name: | LOC105370401 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.055556 |
| GC%: | 0.368421 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |