TSS: Rfhg 166322.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000335142.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2721466,EH38E1716255) |chr=chr14 |cpg_percent=0.163934 |de...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001271014) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2721466,EH38E1716255) | |ccre_description=PLS,CTCF-bound (EH38D2721466,EH38E1716255) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.163934 | |cpg_percent=0.163934 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001271014) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-15 | ||
|end=55580138 | |end=55580138 | ||
|entrez_id= | |entrez_id=100129075 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.774194 | |gc_percent=0.774194 | ||
|gene_alias= | |gene_alias=C14orf33{{!}}MYCLo-3 | ||
|gene_description= | |gene_description=KTN1 antisense RNA 1 | ||
|gene_id=100129075 | |gene_id=100129075 | ||
|gene_name=KTN1 | |gene_name=KTN1-AS1 | ||
|gene_source=HGNC:19842 | |gene_source=HGNC:19842 | ||
|gene_symbol=KTN1-AS1 | |gene_symbol=KTN1-AS1 | ||
|gene_synonyms=MYCLo-3 | |gene_synonyms=MYCLo-3 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:19842 | |hgnc_mgi_id=HGNC:19842 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000186615 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_027123 | ||
|nearest_refseq= | |nearest_refseq=NR_027123 | ||
|nearest_unigene= | |nearest_unigene=Hs.633724 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=55580077 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 11:21, 23 June 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||||
| TSS cluster detected* | 7 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2721466,EH38E1716255) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NR_027123 |
| Entrez ID: | 100129075 |
| Nearest Unigene: | Hs.633724 |
| Nearest Refseq: | NR_027123 |
| Nearest Ensembl: | ENSG00000186615 |
| Gene Name: | KTN1-AS1 |
| Gene Alias: | C14orf33|MYCLo-3 |
| Gene Description: | KTN1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.163934 |
| GC%: | 0.774194 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.