TSS: Rfhg 168135.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000556690.5)
|annotation=promoter-TSS (NM_000428)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2737864,EH38E1727949)
|ccre_description=PLS,CTCF-bound (EH38D2737864,EH38E1727949)
|chr=chr14
|chr=chr14
|cpg_percent=0.062500
|cpg_percent=0.062500
|detailed_annotation=protein_coding-promoter-TSS (ENST00000556690.5)
|detailed_annotation=promoter-TSS (NM_000428)
|distance=0
|distance=0
|distance_to_tss=-37
|distance_to_tss=32
|end=74612245
|end=74612245
|entrez_id=ENSG00000119681
|entrez_id=4053
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.617284
|gc_percent=0.617284
|gene_alias=
|gene_alias=C14orf141{{!}}GLC3D{{!}}LTBP3{{!}}MSPKA{{!}}MSTP031{{!}}WMS3
|gene_description=
|gene_description=latent transforming growth factor beta binding protein 2
|gene_id=4053
|gene_id=4053
|gene_name=latent transforming growth factor beta binding protein 2; latent transforming growth factor beta binding protein 3
|gene_name=LTBP2
|gene_source=HGNC:6715 HGNC:6716
|gene_source=HGNC:6715 HGNC:6716
|gene_symbol=LTBP2 LTBP3
|gene_symbol=LTBP2 LTBP3
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:6715 HGNC:6716
|hgnc_mgi_id=HGNC:6715 HGNC:6716
|nearest_ensembl=
|nearest_ensembl=ENSG00000119681
|nearest_promoter_id=ENST00000557425.1
|nearest_promoter_id=NM_000428
|nearest_refseq=
|nearest_refseq=NM_000428
|nearest_unigene=ENST00000553939
|nearest_unigene=Hs.512776
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=74612164
|start=74612165
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 11:52, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_168135.1
TSS ID(Version3):hg_144068.1
hg_144066.1
hg_144067.1
Species:human
Chr:chr14
Start:74612165
End:74612245
Strand:-
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2737864,EH38E1727949)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000261978.9:0
BC078659:0
GeneID:4053
HGNC/MGI_ID:HGNC:6715 HGNC:6716
UniProt_ID:Q14767 Q6AZ94
Nearer transcript ids and distances:
    Gene_name:LTBP2
    Gene_symbol:LTBP2 LTBP3
    Gene_synonyms:
    Gene_source:HGNC:6715 HGNC:6716



    TATA-Box annotation

    Distance to TSS:32
    Nearest PromoterID:NM_000428
    Entrez ID:4053
    Nearest Unigene:Hs.512776
    Nearest Refseq:NM_000428
    Nearest Ensembl:ENSG00000119681
    Gene Name:LTBP2
    Gene Alias:C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3
    Gene Type:protein-coding
    CpG%:0.062500
    GC%:0.617284
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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