TSS: Rfhg 172880.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001258420) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2780101,EH38E1756192) | |ccre_description=PLS,CTCF-bound (EH38D2780101,EH38E1756192) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.111111 | |cpg_percent=0.111111 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001258420) | ||
|distance=-349 | |distance=-349 | ||
|distance_to_tss=- | |distance_to_tss=-38 | ||
|end=40807056 | |end=40807056 | ||
|entrez_id= | |entrez_id=84936 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=ANCHR{{!}}MPFYVE | ||
|gene_description= | |gene_description=zinc finger FYVE-type containing 19 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=ZFYVE19 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000166140 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001258420 | ||
|nearest_refseq= | |nearest_refseq=NM_032850 | ||
|nearest_unigene= | |nearest_unigene=Hs.121676 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=40807047 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 13:11, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2780101,EH38E1756192) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NM_001258420 |
| Entrez ID: | 84936 |
| Nearest Unigene: | Hs.121676 |
| Nearest Refseq: | NM_032850 |
| Nearest Ensembl: | ENSG00000166140 |
| Gene Name: | ZFYVE19 |
| Gene Alias: | ANCHR|MPFYVE |
| Gene Type: | protein-coding |
| CpG%: | 0.111111 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |