TSS: Rfhg 17375.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_110716) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2254529,EH38E1407077) | |ccre_description=pELS,CTCF-bound (EH38D2254529,EH38E1407077) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.080000 | |cpg_percent=0.080000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_110716) | ||
|distance=-52 | |distance=-52 | ||
|distance_to_tss= | |distance_to_tss=64 | ||
|end=190478337 | |end=190478337 | ||
|entrez_id= | |entrez_id=101929120 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.576923 | |gc_percent=0.576923 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 1351 | ||
|gene_id=101929120 | |gene_id=101929120 | ||
|gene_name= | |gene_name=LINC01351 | ||
|gene_source=HGNC:50577 | |gene_source=HGNC:50577 | ||
|gene_symbol=BRINP3-DT | |gene_symbol=BRINP3-DT | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:50577 | |hgnc_mgi_id=HGNC:50577 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_110716 | ||
|nearest_refseq= | |nearest_refseq=NR_110716 | ||
|nearest_unigene= | |nearest_unigene=Hs.602301 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=190478312 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 13:26, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2254529,EH38E1407077) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 64 |
|---|---|
| Nearest PromoterID: | NR_110716 |
| Entrez ID: | 101929120 |
| Nearest Unigene: | Hs.602301 |
| Nearest Refseq: | NR_110716 |
| Nearest Ensembl: | |
| Gene Name: | LINC01351 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.080000 |
| GC%: | 0.576923 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.