TSS: Rfhg 179256.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000409413.3) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D2834858,EH38E1794822) |chr=chr16 |cpg_percent=0.076923 |...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_145270) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2834858,EH38E1794822) | |ccre_description=pELS,CTCF-bound (EH38D2834858,EH38E1794822) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.076923 | |cpg_percent=0.076923 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_145270) | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-560 | ||
|end=559841 | |end=559841 | ||
|entrez_id= | |entrez_id=146325 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.428571 | |gc_percent=0.428571 | ||
|gene_alias= | |gene_alias=C16orf11{{!}}LA16c-366D1.2 | ||
|gene_description= | |gene_description=proline rich 35 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=PRR35 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000161992 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_145270 | ||
|nearest_refseq= | |nearest_refseq=NM_145270 | ||
|nearest_unigene= | |nearest_unigene=Hs.632220 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=559828 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 15:01, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2834858,EH38E1794822) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -560 |
|---|---|
| Nearest PromoterID: | NM_145270 |
| Entrez ID: | 146325 |
| Nearest Unigene: | Hs.632220 |
| Nearest Refseq: | NM_145270 |
| Nearest Ensembl: | ENSG00000161992 |
| Gene Name: | PRR35 |
| Gene Alias: | C16orf11|LA16c-366D1.2 |
| Gene Type: | protein-coding |
| CpG%: | 0.076923 |
| GC%: | 0.428571 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |