TSS: Rfhg 179972.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_016333, intron 11 of 14) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=L3b{{!}}LINE{{!}}CR1 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=8542 | ||
|end=2768747 | |end=2768747 | ||
|entrez_id= | |entrez_id=6923 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.578947 | |gc_percent=0.578947 | ||
|gene_alias= | |gene_alias=SIII{{!}}TCEB2 | ||
|gene_description= | |gene_description=elongin B | ||
|gene_id=23524 | |gene_id=23524 | ||
|gene_name= | |gene_name=ELOB | ||
|gene_source=HGNC:16639 | |gene_source=HGNC:16639 | ||
|gene_symbol=SRRM2 | |gene_symbol=SRRM2 | ||
|gene_synonyms=Cwc21 KIAA0324 SRL300 SRm300 | |gene_synonyms=Cwc21 KIAA0324 SRL300 SRm300 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16639 | |hgnc_mgi_id=HGNC:16639 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000103363 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_007108 | ||
|nearest_refseq= | |nearest_refseq=NM_007108 | ||
|nearest_unigene= | |nearest_unigene=Hs.172772 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=2768729 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 15:13, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 8542 |
|---|---|
| Nearest PromoterID: | NM_007108 |
| Entrez ID: | 6923 |
| Nearest Unigene: | Hs.172772 |
| Nearest Refseq: | NM_007108 |
| Nearest Ensembl: | ENSG00000103363 |
| Gene Name: | ELOB |
| Gene Alias: | SIII|TCEB2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.578947 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.