TSS: Rfhg 185691.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000261769.9) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2878152,EH38E1824072) |chr=chr16 |cpg_percent=0.000000 |de...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_004360) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2878152,EH38E1824072) | |ccre_description=PLS,CTCF-bound (EH38D2878152,EH38E1824072) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_004360) | ||
|distance=42 | |distance=42 | ||
|distance_to_tss= | |distance_to_tss=24 | ||
|end=68737319 | |end=68737319 | ||
|entrez_id= | |entrez_id=999 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=Arc-1{{!}}BCDS1{{!}}CD324{{!}}CDHE{{!}}ECAD{{!}}LCAM{{!}}UVO | ||
|gene_description= | |gene_description=cadherin 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=CDH1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000039068 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001317184 | ||
|nearest_refseq= | |nearest_refseq=NM_004360 | ||
|nearest_unigene= | |nearest_unigene=Hs.461086 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=68737314 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:52, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2878152,EH38E1824072) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001317184 |
| Entrez ID: | 999 |
| Nearest Unigene: | Hs.461086 |
| Nearest Refseq: | NM_004360 |
| Nearest Ensembl: | ENSG00000039068 |
| Gene Name: | CDH1 |
| Gene Alias: | Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |