TSS: Rfhg 187545.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000268695.9)
|annotation=promoter-TSS (NR_134670)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2897170,EH38E1837528)
|ccre_description=PLS,CTCF-bound (EH38D2897170,EH38E1837528)
|chr=chr16
|chr=chr16
|cpg_percent=0.129412
|cpg_percent=0.129412
|detailed_annotation=protein_coding-promoter-TSS (ENST00000268695.9)
|detailed_annotation=promoter-TSS (NR_134670)
|distance=0
|distance=0
|distance_to_tss=12
|distance_to_tss=-17
|end=88857153
|end=88857153
|entrez_id=ENSG00000167515
|entrez_id=51693
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.732558
|gc_percent=0.732558
|gene_alias=
|gene_alias=HSPC176{{!}}PERRB
|gene_description=
|gene_description=trafficking protein particle complex 2 like
|gene_id=51693
|gene_id=51693
|gene_name=trafficking protein particle complex subunit 2L
|gene_name=TRAPPC2L
|gene_source=HGNC:30887
|gene_source=HGNC:30887
|gene_symbol=TRAPPC2L
|gene_symbol=TRAPPC2L
|gene_synonyms=HSPC176
|gene_synonyms=HSPC176
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:30887
|hgnc_mgi_id=HGNC:30887
|nearest_ensembl=
|nearest_ensembl=ENSG00000167515
|nearest_promoter_id=ENST00000625770.2
|nearest_promoter_id=NM_001318530
|nearest_refseq=
|nearest_refseq=NM_016209
|nearest_unigene=ENST00000564365
|nearest_unigene=Hs.461722
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=88857067
|start=88857068
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 17:23, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_187545.1
TSS ID(Version3):hg_155563.1
Species:human
Chr:chr16
Start:88857068
End:88857153
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2897170,EH38E1837528)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000567895.5:0
ENST00000301021.7:0
ENST00000625770.2:0
ENST00000564547.1:0
ENST00000562792.1:0
ENST00000565504.5:0
ENST00000565205.5:0
ENST00000567312.5:0
ENST00000568583.5:0
ENST00000564404.5:0
AF089106:0
AK311885:0
BC105809:0
AK126779:0
AF161524:0
AK310805:0
BC018024:0
BC011369:0
GeneID:51693
HGNC/MGI_ID:HGNC:30887
UniProt_ID:A0A0B4J286 A0A0B4J294 H3BP13 H3BPE0 H3BPN3 H3BUK6 Q9UL33
Nearer transcript ids and distances:
    Gene_name:TRAPPC2L
    Gene_symbol:TRAPPC2L
    Gene_synonyms:HSPC176
    Gene_source:HGNC:30887



    TATA-Box annotation

    Distance to TSS:-17
    Nearest PromoterID:NM_001318530
    Entrez ID:51693
    Nearest Unigene:Hs.461722
    Nearest Refseq:NM_016209
    Nearest Ensembl:ENSG00000167515
    Gene Name:TRAPPC2L
    Gene Alias:HSPC176|PERRB
    Gene Type:protein-coding
    CpG%:0.129412
    GC%:0.732558
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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