TSS: Rfhg 187883.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000401468.7, intron 4 of 11) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D2899105,EH38E1839153) |chr=chr17 |cpg_percent=...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_001366254, intron 12 of 19).2 | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D2899105,EH38E1839153) | |ccre_description=dELS,CTCF-bound (EH38D2899105,EH38E1839153) | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=MIRc{{!}}SINE{{!}}MIR | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=112177 | ||
|end=602671 | |end=602671 | ||
|entrez_id= | |entrez_id=55275 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.473684 | |gc_percent=0.473684 | ||
|gene_alias= | |gene_alias=HCCS1{{!}}PCH2E{{!}}hVps53L{{!}}pp13624 | ||
|gene_description= | |gene_description=VPS53 subunit of GARP complex | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=VPS53 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000141252 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001366253 | ||
|nearest_refseq= | |nearest_refseq=NM_018289 | ||
|nearest_unigene= | |nearest_unigene=Hs.461819 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=602653 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 17:29, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2899105,EH38E1839153) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 112177 |
|---|---|
| Nearest PromoterID: | NM_001366253 |
| Entrez ID: | 55275 |
| Nearest Unigene: | Hs.461819 |
| Nearest Refseq: | NM_018289 |
| Nearest Ensembl: | ENSG00000141252 |
| Gene Name: | VPS53 |
| Gene Alias: | HCCS1|PCH2E|hVps53L|pp13624 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.473684 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |