TSS: Rfhg 189345.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001040059) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.026316 | |cpg_percent=0.026316 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001040059) | ||
|distance= | |distance= | ||
|distance_to_tss=713 | |distance_to_tss=713 | ||
|end=7578687 | |end=7578687 | ||
|entrez_id= | |entrez_id=26781 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.615385 | |gc_percent=0.615385 | ||
|gene_alias= | |gene_alias=RNU67{{!}}U67 | ||
|gene_description= | |gene_description=small nucleolar RNA, H/ACA box 67 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=SNORA67 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
Line 21: | Line 21: | ||
|gene_type=snoRNA | |gene_type=snoRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000277985 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_002912 | ||
|nearest_refseq= | |nearest_refseq=NR_002912 | ||
|nearest_unigene= | |nearest_unigene=Hs.129673 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=7578649 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Revision as of 17:57, 23 June 2023
Basic information about the TSS
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Source datasets | ||||||||||||||
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Protocol | ||||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | - |
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Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 713 |
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Nearest PromoterID: | NR_002912 |
Entrez ID: | 26781 |
Nearest Unigene: | Hs.129673 |
Nearest Refseq: | NR_002912 |
Nearest Ensembl: | ENSG00000277985 |
Gene Name: | SNORA67 |
Gene Alias: | RNU67|U67 |
Gene Description: | small nucleolar RNA, H/ACA box 67 |
Gene Type: | snoRNA |
CpG%: | 0.026316 |
GC%: | 0.615385 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |