TSS: Rfhg 189368.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000359822.10) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523) |chr=chr17 |cpg_percent=0.058824 |d...")
 
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000359822.10)
|annotation=promoter-TSS (NR_136403)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523)
|ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523)
|chr=chr17
|chr=chr17
|cpg_percent=0.058824
|cpg_percent=0.058824
|detailed_annotation=protein_coding-promoter-TSS (ENST00000359822.10)
|detailed_annotation=promoter-TSS (NR_136403)
|distance=0
|distance=0
|distance_to_tss=9
|distance_to_tss=-15
|end=7583863
|end=7583863
|entrez_id=ENSG00000129255
|entrez_id=9526
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
|gene_alias=
|gene_alias=CDGIF{{!}}HBEBP2BPA{{!}}Lec35{{!}}My008{{!}}PP3958{{!}}PQLC5{{!}}SL15{{!}}SLC66A5
|gene_description=
|gene_description=mannose-P-dolichol utilization defect 1
|gene_id=9526
|gene_id=9526
|gene_name=mannose-P-dolichol utilization defect 1
|gene_name=MPDU1
|gene_source=HGNC:7207
|gene_source=HGNC:7207
|gene_symbol=MPDU1
|gene_symbol=MPDU1
|gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5
|gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:7207
|hgnc_mgi_id=HGNC:7207
|nearest_ensembl=
|nearest_ensembl=ENSG00000129255
|nearest_promoter_id=ENST00000396501.8
|nearest_promoter_id=NM_004870
|nearest_refseq=
|nearest_refseq=NM_004870
|nearest_unigene=ENST00000423172
|nearest_unigene=Hs.246381
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=7583811
|start=7583812
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 17:57, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_189368.1
TSS ID(Version3):hg_159281.1
Species:human
Chr:chr17
Start:7583812
End:7583863
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2906081,EH38E1844523)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Transcript_name:ENST00000571822.5 ENST00000396501.8 ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 BC001898 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597
Distance:0
GeneID:9526
HGNC/MGI_ID:HGNC:7207
UniProt_ID:A0A0S2Z4T4 A0A0S2Z4W8 B2RB74 B4DTB4 I3L1D2 I3L295 I3L4E0 J3KT75 J3QRD5 J3QS48 J3QW43 O75352 Q1HDL3 Q96K24 Q96N63
Gene_name:MPDU1
Gene_symbol:MPDU1
Gene_synonyms:CDGIf Lec35 PQLC5 SL15 SLC66A5
Gene_source:HGNC:7207



TATA-Box annotation

Distance to TSS:-15
Nearest PromoterID:NM_004870
Entrez ID:9526
Nearest Unigene:Hs.246381
Nearest Refseq:NM_004870
Nearest Ensembl:ENSG00000129255
Gene Name:MPDU1
Gene Alias:CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15|SLC66A5
Gene Description:mannose-P-dolichol utilization defect 1
Gene Type:protein-coding
CpG%:0.058824
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_189368.1&oldid=2428200"