TSS: Rfhg 190644.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000323019.8)
|annotation=promoter-TSS (NM_001144900)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2915414,EH38E1850975)
|ccre_description=PLS,CTCF-bound (EH38D2915414,EH38E1850975)
|chr=chr17
|chr=chr17
|cpg_percent=0.089286
|cpg_percent=0.089286
|detailed_annotation=protein_coding-promoter-TSS (ENST00000323019.8)
|detailed_annotation=promoter-TSS (NM_001144900)
|distance=0
|distance=0
|distance_to_tss=-1
|distance_to_tss=-47
|end=18260671
|end=18260671
|entrez_id=ENSG00000177427
|entrez_id=125170
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.654867
|gc_percent=0.654867
|gene_alias=
|gene_alias=MID49{{!}}SMCR7
|gene_description=
|gene_description=mitochondrial elongation factor 2
|gene_id=125170
|gene_id=125170
|gene_name=mitochondrial elongation factor 2
|gene_name=MIEF2
|gene_source=HGNC:17920
|gene_source=HGNC:17920
|gene_symbol=MIEF2
|gene_symbol=MIEF2
|gene_synonyms=MGC23130 MiD49
|gene_synonyms=MGC23130 MiD49
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:17920
|hgnc_mgi_id=HGNC:17920
|nearest_ensembl=
|nearest_ensembl=ENSG00000177427
|nearest_promoter_id=ENST00000577216.1
|nearest_promoter_id=NM_139162
|nearest_refseq=
|nearest_refseq=NM_139162
|nearest_unigene=ENST00000579341
|nearest_unigene=Hs.655555
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=18260558
|start=18260559
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 18:19, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_190644.1
Species:human
Chr:chr17
Start:18260559
End:18260671
Strand:+
Source datasets
Protocol
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2915414,EH38E1850975)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000578174.5:0
ENST00000395704.8:0
ENST00000395703.8:0
ENST00000577216.1:0
ENST00000578621.5:0
ENST00000579341.5:0
ENST00000583745.1:0
ENST00000323019.9:0
AK128310:0
GeneID:125170
HGNC/MGI_ID:HGNC:17920
UniProt_ID:A8MT25 J3KTJ4 J3QR30 K7EKV6 Q96C03
Nearer transcript ids and distances:
    Gene_name:MIEF2
    Gene_symbol:MIEF2
    Gene_synonyms:MGC23130 MiD49
    Gene_source:HGNC:17920



    TATA-Box annotation

    Distance to TSS:-47
    Nearest PromoterID:NM_139162
    Entrez ID:125170
    Nearest Unigene:Hs.655555
    Nearest Refseq:NM_139162
    Nearest Ensembl:ENSG00000177427
    Gene Name:MIEF2
    Gene Alias:MID49|SMCR7
    Gene Type:protein-coding
    CpG%:0.089286
    GC%:0.654867
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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