TSS: Rfhg 193941.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000590052.1) |ccre_category=PLS |ccre_description=PLS (EH38D2932783,EH38E1863659) |chr=chr17 |cpg_percent=0.000000 |detailed_anno...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2932783,EH38E1863659) | |ccre_description=PLS (EH38D2932783,EH38E1863659) | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance=9 | |distance=9 | ||
|distance_to_tss=- | |distance_to_tss=-6170 | ||
|end=42546755 | |end=42546755 | ||
|entrez_id= | |entrez_id=3292 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=17-beta-HSD{{!}}20-alpha-HSD{{!}}E2DH{{!}}EDH17B2{{!}}EDHB17{{!}}HSD17{{!}}SDR28C1 | ||
|gene_description= | |gene_description=hydroxysteroid 17-beta dehydrogenase 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=HSD17B1 | ||
|gene_source=HGNC:5216 | |gene_source=HGNC:5216 | ||
|gene_symbol=HSD17B1P1 | |gene_symbol=HSD17B1P1 | ||
|gene_synonyms=SDR28C1P1 | |gene_synonyms=SDR28C1P1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5216 | |hgnc_mgi_id=HGNC:5216 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000108786 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001330219 | ||
|nearest_refseq= | |nearest_refseq=NM_000413 | ||
|nearest_unigene= | |nearest_unigene=Hs.654385 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=42546751 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 19:15, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2932783,EH38E1863659) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -6170 |
|---|---|
| Nearest PromoterID: | NM_001330219 |
| Entrez ID: | 3292 |
| Nearest Unigene: | Hs.654385 |
| Nearest Refseq: | NM_000413 |
| Nearest Ensembl: | ENSG00000108786 |
| Gene Name: | HSD17B1 |
| Gene Alias: | 17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.