TSS: Rfhg 194021.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000361523.8) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2933065,EH38E1863903) |chr=chr17 |cpg_percent=0.132075 |de...")
 
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000361523.8)
|annotation=promoter-TSS (NM_001313998)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2933065,EH38E1863903)
|ccre_description=PLS,CTCF-bound (EH38D2933065,EH38E1863903)
|chr=chr17
|chr=chr17
|cpg_percent=0.132075
|cpg_percent=0.132075
|detailed_annotation=protein_coding-promoter-TSS (ENST00000361523.8)
|detailed_annotation=promoter-TSS (NM_001313998)
|distance=0
|distance=0
|distance_to_tss=3
|distance_to_tss=7
|end=42824302
|end=42824302
|entrez_id=ENSG00000126581
|entrez_id=8678
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.648148
|gc_percent=0.648148
|gene_alias=
|gene_alias=ATG6{{!}}VPS30{{!}}beclin1
|gene_description=
|gene_description=beclin 1
|gene_id=8678
|gene_id=8678
|gene_name=beclin 1
|gene_name=BECN1
|gene_source=HGNC:1034
|gene_source=HGNC:1034
|gene_symbol=BECN1
|gene_symbol=BECN1
|gene_synonyms=ATG6 VPS30
|gene_synonyms=ATG6 VPS30
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:1034
|hgnc_mgi_id=HGNC:1034
|nearest_ensembl=
|nearest_ensembl=ENSG00000126581
|nearest_promoter_id=ENST00000617806.4
|nearest_promoter_id=NM_001313998
|nearest_refseq=
|nearest_refseq=NM_003766
|nearest_unigene=ENST00000587880
|nearest_unigene=Hs.716464
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=42824248
|start=42824249
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 19:16, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_194021.1
TSS ID(Version3):hg_166192.1
Species:human
Chr:chr17
Start:42824249
End:42824302
Strand:-
Source datasets
Protocol
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2933065,EH38E1863903)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000361523.8:0
ENST00000617806.4:0
ENST00000590099.6:0
ENST00000438274.7:0
ENST00000543382.6:0
ENST00000593205.5:0
ENST00000591085.1:0
ENST00000585515.5:0
ENST00000591307.5:0
ENST00000593112.1:0
HM005628:0
BC010276:0
BX647788:0
AF139131:0
AK298619:0
AK299616:0
AK223411:0
AK312651:0
GeneID:8678
HGNC/MGI_ID:HGNC:1034
UniProt_ID:A0A024R1X5 B4DQ36 B4DS82 E7EV84 K7EKK2 K7EN35 Q53F78
Nearer transcript ids and distances:
    Gene_name:BECN1
    Gene_symbol:BECN1
    Gene_synonyms:ATG6 VPS30
    Gene_source:HGNC:1034



    TATA-Box annotation

    Distance to TSS:7
    Nearest PromoterID:NM_001313998
    Entrez ID:8678
    Nearest Unigene:Hs.716464
    Nearest Refseq:NM_003766
    Nearest Ensembl:ENSG00000126581
    Gene Name:BECN1
    Gene Alias:ATG6|VPS30|beclin1
    Gene Type:protein-coding
    CpG%:0.132075
    GC%:0.648148
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_194021.1&oldid=2433372"