TSS: Rfhg 204927.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000333511.8) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3030698,EH38E1930120) |chr=chr19 |cpg_percent=0.000000 |de...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001728) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3030698,EH38E1930120) | |ccre_description=PLS,CTCF-bound (EH38D3030698,EH38E1930120) | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001728) | ||
|distance=15 | |distance=15 | ||
|distance_to_tss=- | |distance_to_tss=-342 | ||
|end=572266 | |end=572266 | ||
|entrez_id= | |entrez_id=682 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.291667 | |gc_percent=0.291667 | ||
|gene_alias= | |gene_alias=5F7{{!}}CD147{{!}}EMMPRIN{{!}}EMPRIN{{!}}OK{{!}}SLC7A11{{!}}TCSF | ||
|gene_description= | |gene_description=basigin (Ok blood group) | ||
|gene_id= | |gene_id= | ||
|gene_name=BSG | |gene_name=BSG | ||
|gene_source=HGNC:55286 | |gene_source=HGNC:55286 | ||
|gene_symbol=BSG-AS1 | |gene_symbol=BSG-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:55286 | |hgnc_mgi_id=HGNC:55286 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000172270 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001322243 | ||
|nearest_refseq= | |nearest_refseq=NM_001728 | ||
|nearest_unigene= | |nearest_unigene=Hs.501293 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=572243 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 22:28, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3030698,EH38E1930120) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -342 |
|---|---|
| Nearest PromoterID: | NM_001322243 |
| Entrez ID: | 682 |
| Nearest Unigene: | Hs.501293 |
| Nearest Refseq: | NM_001728 |
| Nearest Ensembl: | ENSG00000172270 |
| Gene Name: | BSG |
| Gene Alias: | 5F7|CD147|EMMPRIN|EMPRIN|OK|SLC7A11|TCSF |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.291667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.