TSS: Rfhg 208137.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=TTS (ENST00000587486.6) |ccre_category=pELS |ccre_description=pELS (EH38D3042861,EH38E1940080) |chr=chr19 |cpg_percent=0.071429 |detailed_annotation=...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |annotation=TTS (NR_106770) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D3042861,EH38E1940080) | |ccre_description=pELS (EH38D3042861,EH38E1940080) | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.071429 | |cpg_percent=0.071429 | ||
|detailed_annotation= | |detailed_annotation=TTS (NR_106770) | ||
|distance=314 | |distance=314 | ||
|distance_to_tss=377 | |distance_to_tss=377 | ||
|end=12940868 | |end=12940868 | ||
|entrez_id= | |entrez_id=102466659 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.466667 | |gc_percent=0.466667 | ||
|gene_alias= | |gene_alias=hsa-mir-6515{{!}}mir-6515 | ||
|gene_description= | |gene_description=microRNA 6515 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=MIR6515 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000274417 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_106770 | ||
|nearest_refseq= | |nearest_refseq=NR_106770 | ||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=12940854 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 23:26, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D3042861,EH38E1940080) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 377 |
|---|---|
| Nearest PromoterID: | NR_106770 |
| Entrez ID: | 102466659 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106770 |
| Nearest Ensembl: | ENSG00000274417 |
| Gene Name: | MIR6515 |
| Gene Alias: | hsa-mir-6515|mir-6515 |
| Gene Type: | ncRNA |
| CpG%: | 0.071429 |
| GC%: | 0.466667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |