TSS: Rfhg 210127.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000418100.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3051056,EH38E1946408) |chr=chr19 |cpg_percent=0.067797 |de...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001355406) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3051056,EH38E1946408) | |ccre_description=PLS,CTCF-bound (EH38D3051056,EH38E1946408) | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.067797 | |cpg_percent=0.067797 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001355406) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=22 | ||
|end=23250402 | |end=23250402 | ||
|entrez_id= | |entrez_id=440519 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.616667 | |gc_percent=0.616667 | ||
|gene_alias= | |gene_alias=ZNF724P | ||
|gene_description= | |gene_description=zinc finger protein 724 | ||
|gene_id=440519 | |gene_id=440519 | ||
|gene_name= | |gene_name=ZNF724 | ||
|gene_source=HGNC:32460 | |gene_source=HGNC:32460 | ||
|gene_symbol=ZNF724 | |gene_symbol=ZNF724 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:32460 | |hgnc_mgi_id=HGNC:32460 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000196081 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001355404 | ||
|nearest_refseq= | |nearest_refseq=NM_001355404 | ||
|nearest_unigene= | |nearest_unigene=Hs.675814 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=23250343 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 00:00, 24 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 9 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3051056,EH38E1946408) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_001355404 |
| Entrez ID: | 440519 |
| Nearest Unigene: | Hs.675814 |
| Nearest Refseq: | NM_001355404 |
| Nearest Ensembl: | ENSG00000196081 |
| Gene Name: | ZNF724 |
| Gene Alias: | ZNF724P |
| Gene Type: | protein-coding |
| CpG%: | 0.067797 |
| GC%: | 0.616667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.