TSS: Rfhg 210565.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000498907.2)
|annotation=promoter-TSS (NM_001287424)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3056247,EH38E1949613)
|ccre_description=PLS,CTCF-bound (EH38D3056247,EH38E1949613)
|chr=chr19
|chr=chr19
|cpg_percent=0.078431
|cpg_percent=0.078431
|detailed_annotation=protein_coding-promoter-TSS (ENST00000498907.2)
|detailed_annotation=promoter-TSS (NM_001287424)
|distance=0
|distance=0
|distance_to_tss=-26
|distance_to_tss=10
|end=33302857
|end=33302857
|entrez_id=ENSG00000267296
|entrez_id=80054
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.750000
|gc_percent=0.750000
|gene_alias=
|gene_alias=CEBPA-AS1
|gene_description=
|gene_description=CEBPA divergent transcript
|gene_id=80054
|gene_id=80054
|gene_name=CEBPA divergent transcript
|gene_name=CEBPA-DT
|gene_source=HGNC:25710
|gene_source=HGNC:25710
|gene_symbol=CEBPA-DT
|gene_symbol=CEBPA-DT
|gene_synonyms=ADINR
|gene_synonyms=ADINR
|gene_type=antisense
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:25710
|hgnc_mgi_id=HGNC:25710
|nearest_ensembl=
|nearest_ensembl=ENSG00000267296
|nearest_promoter_id=ENST00000592982.2
|nearest_promoter_id=NR_026887
|nearest_refseq=
|nearest_refseq=NR_026887
|nearest_unigene=ENST00000592982
|nearest_unigene=Hs.287521
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=33302805
|start=33302806
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 00:06, 24 June 2023

Basic information about the TSS

TSS ID:rfhg_210565.1
Species:human
Chr:chr19
Start:33302806
End:33302857
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3056247,EH38E1949613)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000592982.2:0
GeneID:80054
HGNC/MGI_ID:HGNC:25710
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:CEBPA-DT
    Gene_symbol:CEBPA-DT
    Gene_synonyms:ADINR
    Gene_source:HGNC:25710



    TATA-Box annotation

    Distance to TSS:10
    Nearest PromoterID:NR_026887
    Entrez ID:80054
    Nearest Unigene:Hs.287521
    Nearest Refseq:NR_026887
    Nearest Ensembl:ENSG00000267296
    Gene Name:CEBPA-DT
    Gene Alias:CEBPA-AS1
    Gene Type:ncRNA
    CpG%:0.078431
    GC%:0.750000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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