TSS: Rfhg 213036.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3064825,EH38E1956322) |chr=chr19 |cpg_percent=0.000000 |detailed_annotation=In...") |
No edit summary |
||
| Line 5: | Line 5: | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=MIR{{!}}SINE{{!}}MIR | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-3960 | ||
|end=43674310 | |end=43674310 | ||
|entrez_id= | |entrez_id=5329 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=CD87{{!}}U-PAR{{!}}UPAR{{!}}URKR | ||
|gene_description= | |gene_description=plasminogen activator, urokinase receptor | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=PLAUR | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000011422 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001005376 | ||
|nearest_refseq= | |nearest_refseq=NM_002659 | ||
|nearest_unigene= | |nearest_unigene=Hs.466871 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=43674302 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 00:51, 24 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3064825,EH38E1956322) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -3960 |
|---|---|
| Nearest PromoterID: | NM_001005376 |
| Entrez ID: | 5329 |
| Nearest Unigene: | Hs.466871 |
| Nearest Refseq: | NM_002659 |
| Nearest Ensembl: | ENSG00000011422 |
| Gene Name: | PLAUR |
| Gene Alias: | CD87|U-PAR|UPAR|URKR |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |