TSS: Rfhg 216173.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000270442.5)
|annotation=promoter-TSS (NM_006737).10
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS (EH38D3074853,EH38E1964374)
|ccre_description=PLS (EH38D3074853,EH38E1964374)
|chr=chr19
|chr=chr19
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000270442.5)
|detailed_annotation=promoter-TSS (NM_006737).10
|distance=25
|distance=25
|distance_to_tss=-25
|distance_to_tss=-25
|end=54850418
|end=54850418
|entrez_id=ENSG00000240403
|entrez_id=3812
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.000000
|gc_percent=0.000000
|gene_alias=
|gene_alias=3DL2{{!}}CD158K{{!}}KIR-3DL2{{!}}NKAT-4{{!}}NKAT4{{!}}NKAT4B{{!}}p140
|gene_description=
|gene_description=killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 2
|gene_id=3812
|gene_id=3812
|gene_name=killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 2
|gene_name=KIR3DL2
|gene_source=HGNC:6339
|gene_source=HGNC:6339
|gene_symbol=KIR3DL2
|gene_symbol=KIR3DL2
|gene_synonyms=CD158K cl-5 nkat4 nkat4a nkat4b
|gene_synonyms=CD158K cl-5 nkat4 nkat4a nkat4b
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:6339
|hgnc_mgi_id=HGNC:6339
|nearest_ensembl=
|nearest_ensembl=ENSG00000240403
|nearest_promoter_id=ENST00000326321.7
|nearest_promoter_id=NM_001242867
|nearest_refseq=
|nearest_refseq=NM_006737
|nearest_unigene=ENST00000270442
|nearest_unigene=Hs.645228
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=54850417
|start=54850418
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 01:46, 24 June 2023

Basic information about the TSS


TSS ID:rfhg_216173.1
Species:human
Chr:chr19
Start:54850418
End:54850418
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS (EH38D3074853,EH38E1964374)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000326321.7:25
AF262967:25
AF263617:25
GeneID:3812
HGNC/MGI_ID:HGNC:6339
UniProt_ID:A0A0U1WNF3
Nearer transcript ids and distances:
    Gene_name:KIR3DL2
    Gene_symbol:KIR3DL2
    Gene_synonyms:CD158K cl-5 nkat4 nkat4a nkat4b
    Gene_source:HGNC:6339



    TATA-Box annotation


    Distance to TSS:-25
    Nearest PromoterID:NM_001242867
    Entrez ID:3812
    Nearest Unigene:Hs.645228
    Nearest Refseq:NM_006737
    Nearest Ensembl:ENSG00000240403
    Gene Name:KIR3DL2
    Gene Alias:3DL2|CD158K|KIR-3DL2|NKAT-4|NKAT4|NKAT4B|p140
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.000000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.