TSS: Rfhg 220231.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3296693,EH38E2110601) |chr=chr20 |cpg_percent=0.000000 |detailed_annotation=In...") |
No edit summary |
||
| Line 9: | Line 9: | ||
|distance_to_tss=-10885 | |distance_to_tss=-10885 | ||
|end=37333837 | |end=37333837 | ||
|entrez_id= | |entrez_id=6714 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.621622 | |gc_percent=0.621622 | ||
|gene_alias= | |gene_alias=ASV{{!}}SRC1{{!}}THC6{{!}}c-SRC{{!}}p60-Src | ||
|gene_description= | |gene_description=SRC proto-oncogene, non-receptor tyrosine kinase | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=SRC | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000197122 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_005417 | ||
|nearest_refseq= | |nearest_refseq=NM_005417 | ||
|nearest_unigene= | |nearest_unigene=Hs.195659 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=37333764 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 02:54, 24 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3296693,EH38E2110601) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -10885 |
|---|---|
| Nearest PromoterID: | NM_005417 |
| Entrez ID: | 6714 |
| Nearest Unigene: | Hs.195659 |
| Nearest Refseq: | NM_005417 |
| Nearest Ensembl: | ENSG00000197122 |
| Gene Name: | SRC |
| Gene Alias: | ASV|SRC1|THC6|c-SRC|p60-Src |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.621622 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |