TSS: Rfhg 220614.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000373030.7)
|annotation=promoter-TSS (NM_001303459)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3301992,EH38E2114162)
|ccre_description=PLS,CTCF-bound (EH38D3301992,EH38E2114162)
|chr=chr20
|chr=chr20
|cpg_percent=0.147727
|cpg_percent=0.147727
|detailed_annotation=protein_coding-promoter-TSS (ENST00000373030.7)
|detailed_annotation=promoter-TSS (NM_001303459)
|distance=0
|distance=0
|distance_to_tss=-26
|distance_to_tss=27
|end=43591008
|end=43591008
|entrez_id=ENSG00000101052
|entrez_id=51098
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.730337
|gc_percent=0.730337
|gene_alias=
|gene_alias=C20orf9{{!}}CGI-53{{!}}NGD2{{!}}NGD5
|gene_description=
|gene_description=intraflagellar transport 52
|gene_id=51098
|gene_id=51098
|gene_name=intraflagellar transport 52
|gene_name=IFT52
|gene_source=HGNC:15901
|gene_source=HGNC:15901
|gene_symbol=IFT52
|gene_symbol=IFT52
|gene_synonyms=CGI-53 NGD2 NGD5 dJ1028D15.1
|gene_synonyms=CGI-53 NGD2 NGD5 dJ1028D15.1
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:15901
|hgnc_mgi_id=HGNC:15901
|nearest_ensembl=
|nearest_ensembl=ENSG00000101052
|nearest_promoter_id=ENST00000373039.4
|nearest_promoter_id=NM_001323580
|nearest_refseq=
|nearest_refseq=NM_016004
|nearest_unigene=ENST00000460014
|nearest_unigene=Hs.444332
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=43590919
|start=43590920
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 03:00, 24 June 2023

Basic information about the TSS

TSS ID:rfhg_220614.1
TSS ID(Version3):hg_184673.1
Species:human
Chr:chr20
Start:43590920
End:43591008
Strand:+
Source datasets
Protocol
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3301992,EH38E2114162)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000373030.8:0
ENST00000373039.4:0
BC039831:0
AK301915:0
AF151811:0
GeneID:51098
HGNC/MGI_ID:HGNC:15901
UniProt_ID:B4DXC7 Q9Y366
Nearer transcript ids and distances:
    Gene_name:IFT52
    Gene_symbol:IFT52
    Gene_synonyms:CGI-53 NGD2 NGD5 dJ1028D15.1
    Gene_source:HGNC:15901



    TATA-Box annotation

    Distance to TSS:27
    Nearest PromoterID:NM_001323580
    Entrez ID:51098
    Nearest Unigene:Hs.444332
    Nearest Refseq:NM_016004
    Nearest Ensembl:ENSG00000101052
    Gene Name:IFT52
    Gene Alias:C20orf9|CGI-53|NGD2|NGD5
    Gene Type:protein-coding
    CpG%:0.147727
    GC%:0.730337
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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