TSS: Rfhg 221569.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3306035,EH38E2117410) |chr=chr20 |cpg_percent=0.000000 |detailed_annotation=In...")
 
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|chr=chr20
|chr=chr20
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=Intergenic
|detailed_annotation=MLT1D{{!}}LTR{{!}}ERVL-MaLR
|distance=
|distance=
|distance_to_tss=-15412
|distance_to_tss=-57760
|end=47844380
|end=47844380
|entrez_id=ENSG00000215448
|entrez_id=55959
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.666667
|gc_percent=0.666667
|gene_alias=
|gene_alias=HSULF-2
|gene_description=
|gene_description=sulfatase 2
|gene_id=
|gene_id=
|gene_name=
|gene_name=SULF2
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=processed_pseudogene
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=ENSG00000196562
|nearest_promoter_id=ENST00000398959.2
|nearest_promoter_id=NM_198596
|nearest_refseq=
|nearest_refseq=NM_018837
|nearest_unigene=ENST00000398959
|nearest_unigene=Hs.162016
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=47844371
|start=47844372
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 03:17, 24 June 2023

Basic information about the TSS


TSS ID:rfhg_221569.1
Species:human
Chr:chr20
Start:47844372
End:47844380
Strand:-
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D3306035,EH38E2117410)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:SULF2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-57760
    Nearest PromoterID:NM_198596
    Entrez ID:55959
    Nearest Unigene:Hs.162016
    Nearest Refseq:NM_018837
    Nearest Ensembl:ENSG00000196562
    Gene Name:SULF2
    Gene Alias:HSULF-2
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.666667
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):