TSS: Rfhg 223030.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000252999.7, exon 2 of 80) |ccre_category=dELS |ccre_description=dELS (EH38D3320274,EH38E2127979) |chr=chr20 |cpg_percent=0.000000 |detai...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |annotation=exon (NM_005560, exon 2 of 80) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D3320274,EH38E2127979) | |ccre_description=dELS (EH38D3320274,EH38E2127979) | ||
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_005560, exon 2 of 80) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=4849 | ||
|end=62362470 | |end=62362470 | ||
|entrez_id= | |entrez_id=3911 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.642857 | |gc_percent=0.642857 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=laminin subunit alpha 5 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LAMA5 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000130702 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_005560 | ||
|nearest_refseq= | |nearest_refseq=NM_005560 | ||
|nearest_unigene= | |nearest_unigene=Hs.473256 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=62362457 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 03:40, 24 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3320274,EH38E2127979) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 4849 |
|---|---|
| Nearest PromoterID: | NM_005560 |
| Entrez ID: | 3911 |
| Nearest Unigene: | Hs.473256 |
| Nearest Refseq: | NM_005560 |
| Nearest Ensembl: | ENSG00000130702 |
| Gene Name: | LAMA5 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.642857 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |