TSS: Rfhg 227411.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000331428.5) |ccre_category=N |ccre_description=N |chr=chr22 |cpg_percent=0.000000 |detailed_annotation=protein_coding-promoter-T...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_175878) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_175878) | ||
|distance=-1 | |distance=-1 | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
|end=16821676 | |end=16821676 | ||
|entrez_id= | |entrez_id=150165 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=XRG3{{!}}XTES | ||
|gene_description= | |gene_description=XK related 3 | ||
|gene_id=150165 | |gene_id=150165 | ||
|gene_name= | |gene_name=XKR3 | ||
|gene_source=HGNC:28778 | |gene_source=HGNC:28778 | ||
|gene_symbol=XKR3 | |gene_symbol=XKR3 | ||
|gene_synonyms=MGC57211 XTES | |gene_synonyms=MGC57211 XTES | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28778 | |hgnc_mgi_id=HGNC:28778 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000172967 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001318251 | ||
|nearest_refseq= | |nearest_refseq=NM_175878 | ||
|nearest_unigene= | |nearest_unigene=Hs.356069 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=16821676 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 04:49, 24 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001318251 |
| Entrez ID: | 150165 |
| Nearest Unigene: | Hs.356069 |
| Nearest Refseq: | NM_175878 |
| Nearest Ensembl: | ENSG00000172967 |
| Gene Name: | XKR3 |
| Gene Alias: | XRG3|XTES |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.