TSS: Rfhg 229759.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000216181.10, intron 1 of 40) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3368844,EH38E2161776) |chr=chr22 |cpg_percent...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_002473, intron 1 of 40) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3368844,EH38E2161776) | |ccre_description=dELS,CTCF-bound (EH38D3368844,EH38E2161776) | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_002473, intron 1 of 40) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=17409 | ||
|end=36370663 | |end=36370663 | ||
|entrez_id= | |entrez_id=4627 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.363636 | |gc_percent=0.363636 | ||
|gene_alias= | |gene_alias=BDPLT6{{!}}DFNA17{{!}}EPSTS{{!}}FTNS{{!}}MATINS{{!}}MHA{{!}}NMHC-II-A{{!}}NMMHC-IIA{{!}}NMMHCA | ||
|gene_description= | |gene_description=myosin heavy chain 9 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=MYH9 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000100345 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_002473 | ||
|nearest_refseq= | |nearest_refseq=NM_002473 | ||
|nearest_unigene= | |nearest_unigene=Hs.474751 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=36370653 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 05:28, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3368844,EH38E2161776) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17409 |
|---|---|
| Nearest PromoterID: | NM_002473 |
| Entrez ID: | 4627 |
| Nearest Unigene: | Hs.474751 |
| Nearest Refseq: | NM_002473 |
| Nearest Ensembl: | ENSG00000100345 |
| Gene Name: | MYH9 |
| Gene Alias: | BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.363636 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |