TSS: Rfhg 230845.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000333487.2, exon 2 of 2) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D3374933,EH38E2166654) |chr=chr22 |cpg_percent=0.000...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=non-coding (NR_157279, exon 2 of 2) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3374933,EH38E2166654) | |ccre_description=pELS,CTCF-bound (EH38D3374933,EH38E2166654) | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=non-coding (NR_157279, exon 2 of 2) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=770 | ||
|end=41833903 | |end=41833903 | ||
|entrez_id= | |entrez_id=112637020 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.437500 | |gc_percent=0.437500 | ||
|gene_alias= | |gene_alias=821D11.7{{!}}RP5 | ||
|gene_description= | |gene_description=SREBF2 antisense RNA 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=SREBF2-AS1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_157279 | ||
|nearest_refseq= | |nearest_refseq=NR_157279 | ||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=41833888 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 05:47, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3374933,EH38E2166654) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 770 |
|---|---|
| Nearest PromoterID: | NR_157279 |
| Entrez ID: | 112637020 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_157279 |
| Nearest Ensembl: | |
| Gene Name: | SREBF2-AS1 |
| Gene Alias: | 821D11.7|RP5 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.437500 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |