TSS: Rfhg 237795.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000372735.1)
|annotation=promoter-TSS (NM_001142529)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D4298761,EH38E2762043)
|ccre_description=PLS,CTCF-bound (EH38D4298761,EH38E2762043)
|chr=chrX
|chr=chrX
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000372735.1)
|detailed_annotation=promoter-TSS (NM_001142529)
|distance=-51
|distance=-51
|distance_to_tss=51
|distance_to_tss=51
|end=102746030
|end=102746030
|entrez_id=ENSG00000198908
|entrez_id=80823
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.000000
|gc_percent=0.000000
|gene_alias=
|gene_alias=GASP3{{!}}p60TRP
|gene_description=
|gene_description=basic helix-loop-helix family member b9
|gene_id=80823
|gene_id=80823
|gene_name=G protein-coupled receptor associated sorting protein family member 3
|gene_name=BHLHB9
|gene_source=HGNC:29353
|gene_source=HGNC:29353
|gene_symbol=GPRASP3
|gene_symbol=GPRASP3
|gene_synonyms=GASP3 KIAA1701 p60TRP
|gene_synonyms=GASP3 KIAA1701 p60TRP
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:29353
|hgnc_mgi_id=HGNC:29353
|nearest_ensembl=
|nearest_ensembl=ENSG00000198908
|nearest_promoter_id=ENST00000447531.5
|nearest_promoter_id=NM_001142530
|nearest_refseq=
|nearest_refseq=NM_030639
|nearest_unigene=ENST00000372735
|nearest_unigene=Hs.4276
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=102746029
|start=102746030
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 07:39, 24 June 2023

Basic information about the TSS

TSS ID:rfhg_237795.1
Species:human
Chr:chrX
Start:102746030
End:102746030
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4298761,EH38E2762043)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000447531.5:-51
ENST00000448867.1:-51
GeneID:80823
HGNC/MGI_ID:HGNC:29353
UniProt_ID:Q6PI77
Nearer transcript ids and distances:
    Gene_name:BHLHB9
    Gene_symbol:GPRASP3
    Gene_synonyms:GASP3 KIAA1701 p60TRP
    Gene_source:HGNC:29353



    TATA-Box annotation

    Distance to TSS:51
    Nearest PromoterID:NM_001142530
    Entrez ID:80823
    Nearest Unigene:Hs.4276
    Nearest Refseq:NM_030639
    Nearest Ensembl:ENSG00000198908
    Gene Name:BHLHB9
    Gene Alias:GASP3|p60TRP
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.000000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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