TSS: Rfhg 2411.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_030812) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2132907,EH38E1323456) | |ccre_description=PLS,CTCF-bound (EH38D2132907,EH38E1323456) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.089744 | |cpg_percent=0.089744 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_030812) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=16 | ||
|end=17755388 | |end=17755388 | ||
|entrez_id= | |entrez_id=81569 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.645570 | |gc_percent=0.645570 | ||
|gene_alias= | |gene_alias=CT57 | ||
|gene_description= | |gene_description=actin like 8 | ||
|gene_id=81569 | |gene_id=81569 | ||
|gene_name= | |gene_name=ACTL8 | ||
|gene_source=HGNC:24018 | |gene_source=HGNC:24018 | ||
|gene_symbol=ACTL8 | |gene_symbol=ACTL8 | ||
|gene_synonyms=CT57 | |gene_synonyms=CT57 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24018 | |hgnc_mgi_id=HGNC:24018 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000117148 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_030812 | ||
|nearest_refseq= | |nearest_refseq=NM_030812 | ||
|nearest_unigene= | |nearest_unigene=Hs.2149 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=17755310 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 08:38, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2132907,EH38E1323456) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_030812 |
| Entrez ID: | 81569 |
| Nearest Unigene: | Hs.2149 |
| Nearest Refseq: | NM_030812 |
| Nearest Ensembl: | ENSG00000117148 |
| Gene Name: | ACTL8 |
| Gene Alias: | CT57 |
| Gene Description: | actin like 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.089744 |
| GC%: | 0.645570 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.