TSS: Rfhg 25036.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000295066.3)
|annotation=promoter-TSS (NR_135587)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3106525,EH38E1985800)
|ccre_description=PLS,CTCF-bound (EH38D3106525,EH38E1985800)
|chr=chr2
|chr=chr2
|cpg_percent=0.101266
|cpg_percent=0.101266
|detailed_annotation=protein_coding-promoter-TSS (ENST00000295066.3)
|detailed_annotation=promoter-TSS (NR_135587)
|distance=0
|distance=0
|distance_to_tss=1
|distance_to_tss=13
|end=32039832
|end=32039832
|entrez_id=ENSG00000162961
|entrez_id=84661
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.662500
|gc_percent=0.662500
|gene_alias=
|gene_alias=Cps25{{!}}HDPY-30{{!}}Saf19
|gene_description=
|gene_description=dpy-30 histone methyltransferase complex regulatory subunit
|gene_id=84661
|gene_id=84661
|gene_name=dpy-30 histone methyltransferase complex regulatory subunit
|gene_name=DPY30
|gene_source=HGNC:24590
|gene_source=HGNC:24590
|gene_symbol=DPY30
|gene_symbol=DPY30
|gene_synonyms=Cps25 HDPY-30 Saf19
|gene_synonyms=Cps25 HDPY-30 Saf19
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:24590
|hgnc_mgi_id=HGNC:24590
|nearest_ensembl=
|nearest_ensembl=ENSG00000162961
|nearest_promoter_id=ENST00000414013.5
|nearest_promoter_id=NM_001321209
|nearest_refseq=
|nearest_refseq=NM_032574
|nearest_unigene=ENST00000295066
|nearest_unigene=Hs.531788
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=32039752
|start=32039753
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 08:54, 24 June 2023

Basic information about the TSS

TSS ID:rfhg_25036.1
TSS ID(Version3):hg_27707.1
Species:human
Chr:chr2
Start:32039753
End:32039832
Strand:-
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3106525,EH38E1985800)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000452582.5:0
ENST00000414013.5:0
ENST00000430665.5:0
ENST00000422413.1:0
ENST00000342166.10:0
ENST00000295066.3:0
BC015970:0
AF226998:0
GeneID:84661
HGNC/MGI_ID:HGNC:24590
UniProt_ID:Q9C005
Nearer transcript ids and distances:
    Gene_name:DPY30
    Gene_symbol:DPY30
    Gene_synonyms:Cps25 HDPY-30 Saf19
    Gene_source:HGNC:24590



    TATA-Box annotation

    Distance to TSS:13
    Nearest PromoterID:NM_001321209
    Entrez ID:84661
    Nearest Unigene:Hs.531788
    Nearest Refseq:NM_032574
    Nearest Ensembl:ENSG00000162961
    Gene Name:DPY30
    Gene Alias:Cps25|HDPY-30|Saf19
    Gene Type:protein-coding
    CpG%:0.101266
    GC%:0.662500
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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