TSS: Rfhg 2532.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000235835.7)
|annotation=promoter-TSS (NR_109848)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2134415,EH38E1324469)
|ccre_description=PLS,CTCF-bound (EH38D2134415,EH38E1324469)
|chr=chr1
|chr=chr1
|cpg_percent=0.187500
|cpg_percent=0.187500
|detailed_annotation=protein_coding-promoter-TSS (ENST00000235835.7)
|detailed_annotation=promoter-TSS (NR_109848)
|distance=0
|distance=0
|distance_to_tss=-6
|distance_to_tss=37
|end=19312149
|end=19312149
|entrez_id=ENSG00000053371
|entrez_id=8574
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.728395
|gc_percent=0.728395
|gene_alias=
|gene_alias=AFAR{{!}}AFAR1{{!}}AFB1-AR1{{!}}AKR7
|gene_description=
|gene_description=aldo-keto reductase family 7 member A2
|gene_id=8574
|gene_id=8574
|gene_name=aldo-keto reductase family 7 member A2
|gene_name=AKR7A2
|gene_source=HGNC:389
|gene_source=HGNC:389
|gene_symbol=AKR7A2
|gene_symbol=AKR7A2
|gene_synonyms=AFAR
|gene_synonyms=AFAR
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:389
|hgnc_mgi_id=HGNC:389
|nearest_ensembl=
|nearest_ensembl=ENSG00000053371
|nearest_promoter_id=ENST00000492217.1
|nearest_promoter_id=NM_003689
|nearest_refseq=
|nearest_refseq=NM_003689
|nearest_unigene=ENST00000481966
|nearest_unigene=Hs.571886
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=19312068
|start=19312069
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 08:59, 24 June 2023

Basic information about the TSS


TSS ID:rfhg_2532.1
TSS ID(Version3):hg_10654.1
Species:human
Chr:chr1
Start:19312069
End:19312149
Strand:-
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2134415,EH38E1324469)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000235835.8:0
ENST00000330072.9:0
ENST00000492217.1:0
BC004111:0
BC011586:0
BC013996:0
AF026947:0
AK225267:0
BC007352:0
BC012171:0
EU794591:0
Y16675:0
BC010852:0
AK303131:0
AK310609:0
GeneID:8574
HGNC/MGI_ID:HGNC:389
UniProt_ID:B4DZX4 H3BLU7 V9HWA2
Nearer transcript ids and distances:
    Gene_name:AKR7A2
    Gene_symbol:AKR7A2
    Gene_synonyms:AFAR
    Gene_source:HGNC:389



    TATA-Box annotation


    Distance to TSS:37
    Nearest PromoterID:NM_003689
    Entrez ID:8574
    Nearest Unigene:Hs.571886
    Nearest Refseq:NM_003689
    Nearest Ensembl:ENSG00000053371
    Gene Name:AKR7A2
    Gene Alias:AFAR|AFAR1|AFB1-AR1|AKR7
    Gene Type:protein-coding
    CpG%:0.187500
    GC%:0.728395
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.