TSS: Rfhg 2532.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_109848) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2134415,EH38E1324469) | |ccre_description=PLS,CTCF-bound (EH38D2134415,EH38E1324469) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.187500 | |cpg_percent=0.187500 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_109848) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=37 | ||
|end=19312149 | |end=19312149 | ||
|entrez_id= | |entrez_id=8574 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.728395 | |gc_percent=0.728395 | ||
|gene_alias= | |gene_alias=AFAR{{!}}AFAR1{{!}}AFB1-AR1{{!}}AKR7 | ||
|gene_description= | |gene_description=aldo-keto reductase family 7 member A2 | ||
|gene_id=8574 | |gene_id=8574 | ||
|gene_name= | |gene_name=AKR7A2 | ||
|gene_source=HGNC:389 | |gene_source=HGNC:389 | ||
|gene_symbol=AKR7A2 | |gene_symbol=AKR7A2 | ||
|gene_synonyms=AFAR | |gene_synonyms=AFAR | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:389 | |hgnc_mgi_id=HGNC:389 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000053371 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_003689 | ||
|nearest_refseq= | |nearest_refseq=NM_003689 | ||
|nearest_unigene= | |nearest_unigene=Hs.571886 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=19312069 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= |
Revision as of 08:59, 24 June 2023
Basic information about the TSS
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Source datasets | ||||||||||||||||
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Protocol | ||||||||||||||||
TSS cluster detected* |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2134415,EH38E1324469) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 37 |
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Nearest PromoterID: | NM_003689 |
Entrez ID: | 8574 |
Nearest Unigene: | Hs.571886 |
Nearest Refseq: | NM_003689 |
Nearest Ensembl: | ENSG00000053371 |
Gene Name: | AKR7A2 |
Gene Alias: | AFAR|AFAR1|AFB1-AR1|AKR7 |
Gene Type: | protein-coding |
CpG%: | 0.187500 |
GC%: | 0.728395 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.