TSS: Hg 100162.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=1481 |entrez_id=6194 |gc_percent=0.427861 |gene_alias=S6 |gene_description=ribosomal protein S6 |gene_name=RPS6 |gene_type=prot...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AF274945:-63 BC035447:-144 | |||
|chr=chr9 | |||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=-63 | |||
|distance_to_tss=1481 | |distance_to_tss=1481 | ||
|end=19378776 | |||
|entrez_id=6194 | |entrez_id=6194 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
|gene_alias=S6 | |gene_alias=S6 | ||
|gene_description=ribosomal protein S6 | |gene_description=ribosomal protein S6 | ||
|gene_id= | |||
|gene_name=RPS6 | |gene_name=RPS6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |||
|nearest_ensembl=ENSG00000137154 | |nearest_ensembl=ENSG00000137154 | ||
|nearest_promoter_id=NM_001010 | |nearest_promoter_id=NM_001010 | ||
|nearest_refseq=NM_001010 | |nearest_refseq=NM_001010 | ||
|nearest_unigene=Hs.408073 | |nearest_unigene=Hs.408073 | ||
|num_trans=2 | |||
|species=human | |||
|start=19378735 | |||
|strand=- | |||
|transcript_name=AF274945 | |||
|tss_classification=no | |||
|tss_id=hg_100162.1 | |tss_id=hg_100162.1 | ||
|tss_score=1 | |||
|uniprot_id=Q9BZU1 | |||
}} | }} | ||
Revision as of 17:02, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1481 |
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| Nearest PromoterID: | NM_001010 |
| Entrez ID: | 6194 |
| Nearest Unigene: | Hs.408073 |
| Nearest Refseq: | NM_001010 |
| Nearest Ensembl: | ENSG00000137154 |
| Gene Name: | RPS6 |
| Gene Alias: | S6 |
| Gene Description: | ribosomal protein S6 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |