TSS: Hg 100202.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=-1133 |entrez_id=4300 |gc_percent=0.447761 |gene_alias=AF9|YEATS3 |gene_description="MLLT3, super elongation complex subunit" |...") |
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{{TSSDetail | {{TSSDetail | ||
|YEATS3= | |||
|chr=chr9 | |||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance= | |||
|distance_to_tss=-1133 | |distance_to_tss=-1133 | ||
|end=20623695 | |||
|entrez_id=4300 | |entrez_id=4300 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_004529 | |nearest_refseq=NM_004529 | ||
|nearest_unigene=Hs.317248 | |nearest_unigene=Hs.317248 | ||
|num_trans=0 | |||
|species=human | |||
|start=20623657 | |||
|strand=- | |||
|tata_box="-27(TCCTTTTTAAAG,-,0.00),-26(CCTTTTTAAAGG,-,0.00),-25(CTTTTTAAAGGT,+,0.00)" | |tata_box="-27(TCCTTTTTAAAG,-,0.00),-26(CCTTTTTAAAGG,-,0.00),-25(CTTTTTAAAGGT,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_100202.1 | |tss_id=hg_100202.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:03, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1133 |
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| Nearest PromoterID: | NM_004529 |
| Entrez ID: | 4300 |
| Nearest Unigene: | Hs.317248 |
| Nearest Refseq: | NM_004529 |
| Nearest Ensembl: | ENSG00000171843 |
| Gene Name: | MLLT3 |
| Gene Alias: | AF9 |
| Gene Description: | "MLLT3, super elongation complex subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-27(TCCTTTTTAAAG,-,0.00),-26(CCTTTTTAAAGG,-,0.00),-25(CTTTTTAAAGGT,+,0.00)" |