TSS: Hg 100290.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=34700 |entrez_id=1993 |gc_percent=0.348259 |gene_alias=HEL-N1|HELN1|HUB |gene_description=ELAV like RNA binding protein 2 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
|HELN1= | |||
|HUB= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |||
|distance_to_tss=34700 | |distance_to_tss=34700 | ||
|end=23786781 | |||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
Line 12: | Line 17: | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
|num_trans=0 | |||
|species=human | |||
|start=23786779 | |||
|strand=- | |||
|tata_box="-55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00)" | |tata_box="-55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100290.1 | |tss_id=hg_100290.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 17:05, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 34700 |
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Nearest PromoterID: | NM_001171197 |
Entrez ID: | 1993 |
Nearest Unigene: | Hs.166109 |
Nearest Refseq: | NM_004432 |
Nearest Ensembl: | ENSG00000107105 |
Gene Name: | ELAVL2 |
Gene Alias: | HEL-N1 |
Gene Description: | ELAV like RNA binding protein 2 |
Gene Type: | protein-coding |
CpG%: | 0.005 |
GC%: | 0.348259 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00)" |