TSS: Hg 100298.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-174 |entrez_id=1993 |gc_percent=0.507463 |gene_alias=HEL-N1|HELN1|HUB |gene_description=ELAV like RNA binding protein 2 |gene_n...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HELN1= | |||
|HUB= | |||
|all_trans=U12431:-57 U29943:-57 ENST00000462649.1:58 uc064skx.1:58 ENST00000380117.5:-91 uc003zpv.4:-91 ENST00000397312.6:167 NM_004432:167 uc003zpu.4:167 AB209294:167 | |||
|chr=chr9 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-57 | |||
|distance_to_tss=-174 | |distance_to_tss=-174 | ||
|end=23826246 | |||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
|num_trans=10 | |||
|species=human | |||
|start=23826231 | |||
|strand=- | |||
|tata_box="-7(CCTTTTAAGACG,+,0.00)" | |tata_box="-7(CCTTTTAAGACG,+,0.00)" | ||
|transcript_name=U12431 U29943 | |||
|tss_classification=yes | |||
|tss_id=hg_100298.1 | |tss_id=hg_100298.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -174 |
|---|---|
| Nearest PromoterID: | NM_004432 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAVL2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-7(CCTTTTAAGACG,+,0.00)" |